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Creating web application on existing sources (cyclos) / wont start with tomcat

 
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Alex-uconomy



Joined: 15 Sep 2010
Posts: 12
Location: Cape Town

PostPosted: Wed Sep 15, 2010 10:35 am    Post subject: Creating web application on existing sources (cyclos) / wont start with tomcat Reply with quote

Hi there

I am struggeling to get cyclos software setup in NetBeans for development. It rund on fine on my tomcat server to use the software, however I can not set up my IDE, and run / deploy it from within netbeans !

here my steps.

I have added the server tomcat ( was able to run a MyStrutsApp tutorial on it)
I have connected NetBeans with the required database (MySql)

Have created a web project with existing sources, pointed to correct Library fodler.
Have created a context.xml file.
Clean and Build the app, the try to deploy it.

Now with out the context.xml file, it will not deploy.

With the file it deploys but does not start !!

I believe it might be the case that when in netbeans, the Configuration files folder does not show all struts and tiles-def files, as it does for my tutorial i tried. Probably because they are in an extra folder ? (web.xml includes and specifies the path fro those though !!)

But anyway, I am a little confused of why I can not set it up properly. I am happy about any suggestion, I am struggling since a while now.

The web app is cyclos, and as said I can run it on tomcat webApps fodler, but not from within netbeans. Any help is appreciated.

MAIN FAULT SEEMS TO BE : listener error / localthread or even leaks - see log

many thanks have a great day everyone ;)
Alex

I want to start coding, not familiar with tomcat, only little with netbean, my biggest project so far by miles.. :) (placement year at the moment)

(plus : How to delete old instances properly? as it seems when deleting a project, and starting tomcat in netbeans, it still tries to deploy / start old deleted applications !? - and i believe this will cause errors as well e.g. starting all over with my app.. ) i think after one week struggling i make things worse rather then fixing things // sorry for long post

thx alex



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Alex-uconomy



Joined: 15 Sep 2010
Posts: 12
Location: Cape Town

PostPosted: Wed Sep 15, 2010 11:01 am    Post subject: as i said Reply with quote

i make things worse..

by changing things in context,xml, springFramework project properties and so on..

No tomcat wont turn off - not through netbeans nor cmd / bin dir

gotta start all over ones more !! :x

I AM USING NB 6.9.1 / tomcat 6 - newest cyclos app / MySql 4.1

PS: i have deleted old "projectName".xml file from catalina home, but no success starting web app from within netbeans !

How do i make sure config files foler in NB picks up the folders with struts and tiles-def files ??
When netbeans starts a web app, does it start the original folder or the one in the build directory ?

kind Regards
Alex
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mdeggers



Joined: 28 Jan 2009
Posts: 208

PostPosted: Thu Sep 16, 2010 6:04 am    Post subject: Re: as i said Reply with quote

Alex-uconomy wrote:
i make things worse..

by changing things in context,xml, springFramework project properties and so on..

No tomcat wont turn off - not through netbeans nor cmd / bin dir

gotta start all over ones more !! Mad

I AM USING NB 6.9.1 / tomcat 6 - newest cyclos app / MySql 4.1

PS: i have deleted old "projectName".xml file from catalina home, but no success starting web app from within netbeans !

How do i make sure config files foler in NB picks up the folders with struts and tiles-def files ??
When netbeans starts a web app, does it start the original folder or the one in the build directory ?

kind Regards
Alex


You might want to upgrade to the latest MySQL on your Windows
platform, unless your eventual production system runs only
MySQL 4.1.

I just glanced at the software. I managed to import the project relatively
easily, and NetBeans only flagged two errors. It built the war file
appropriately and included all of the xml configuration files (see below).

A few things.

In order to avoid having a context.xml file, it's probably easier to rename
the directory to cyclos.

From the installation and maintenance page on the Wiki, you'll need to
increase Tomcat's default memory allocation.

I don't recommend the way they do it, but instead create a separate
setenv.bat file with the following line:

set JAVA_OPTS="-Xms128M –Xmx512M"

That should take care of your out of memory issues (according to their
documentation).

I don't know about the web services errors without digging into the code.
It appears that either Tomcat or the application is getting confused about
interfaces versus implementations.

The threading issue is a problem and will cause memory leaks if you
deploy and undeploy the application. At least one of them is due
to the version of the MySQL driver being used. Upgrade to the latest
5.1 MySQL driver to fix that. The others appear to be code-related,
although I'm not ruling out some more library issues.

If you are not going to use HSQLDB or Hypersonic, you can remove those
jars. The configurations in cyclos.properties are commented out, and
you said you were going to use MySQL.

I am not sure why the concurrent jar is in there, since that has been a
part of Java since JDK 5. I guess cyclos hasn't finished moving their
code base to JDK 5 / JDK 6, even though they seem to make extensive
use of generics.

The configuration files are all there, but don't seem to be in the expected
places. NetBeans even seems to recognize them.

Spring configuration files are in nl.strohalm.cyclos.spring, and the
struts information is in WEB-INF/struts-configs and WEB-INF/tiles-defs.

You might ask the cyclos forum about the JAXB issues.

. . . . just my two cents.

/mde/
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Alex-uconomy



Joined: 15 Sep 2010
Posts: 12
Location: Cape Town

PostPosted: Thu Sep 16, 2010 9:04 am    Post subject: ? Reply with quote

thank you sooo much for your reply, really appreciated, as I am having nothing but trouble getting it set up.

After your post i have started over again, I want to show you my current error and state the steps i undergo to set it up ! maybe we can figure out where I am going wrong, I have never set up such a big project in netbeans !
------------------------------------------------cyclos run deploy log
Starting Tomcat process...
Waiting for Tomcat...
Tomcat server started.
In-place deployment at C:\Programming\nb-projects\cyclos\build\web
C:\Programming\nb-projects\cyclos\build\web\META-INF\context.xml (The system cannot find the path specified)
C:\Programming\nb-projects\cyclos\nbproject\build-impl.xml:868: The module has not been deployed.
BUILD FAILED (total time: 13 seconds)
------------------------------------------------------------------------

I had reinstalled apach, start stop to test it works via cmd. works fine + i set manager role + pw

i deleted the old cyclos, and added new web project with existing sources

I point the project to cyclos, NB detects the web and src folder, I only point it to the correct lib folder.

I then connect NB with the mysql DB ( Unfortunate I have to use 4.1)

i then add and start stop tomcat from NB, it works fine ! (only set path to server + user name, pw ) no private catalina path ! ( not sure if needed )

i then change cyclos.properties file + clean an build cyclos, works within a minute -

Then I feel confident, right click and deploy the project and i get the error above - usually i would now include META folder and context.xml file, then the project will deploy but not start !!

Did you only import the web folder ? the whole cyclos fodler? What do I do wrong ?
+ as info, I am using tomcat zip !
Thank you for ur previous answer mdegger.
You said you are able to manage it, I seem to mess things up further and further.. I better leave it at the stage I am at now, and wait for a reply. maybe you can tell me what i missed or did wrong...

(as i said, putting web folder into tomcat/webapps works fine, just the whole project including src files, i can not get set up in NB)
++ - the shown configuration files folder in NB, only shows web.xml file - does this not mean it did not recognise the struts config file !? Do i / can i add the in properties ? does your fodler show more then web.xml ?
(as you can hear i am pretty confused at the moment )

Thank you so much again for previous answer, the cyclos forum is quite dead, and they do not like helping people who are developing cyclos further, they only like to provide help for people using the software as is.


best regards
Alex

PS: let me know how to show / pay some gratitude / credit e.g. linking ur web page or anything else - in this forum you seem to help a'lot of people

edited later : after creating the bat file you have mentioned, tomcat will not start ! after deleting it it works again !
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mdeggers



Joined: 28 Jan 2009
Posts: 208

PostPosted: Thu Sep 16, 2010 4:34 pm    Post subject: Re: cyclos, web applications with existing sources Reply with quote

Alex-uconomy wrote:

------------------------------------------------cyclos run deploy log
Starting Tomcat process...
Waiting for Tomcat...
Tomcat server started.
In-place deployment at C:\Programming\nb-projects\cyclos\build\web
C:\Programming\nb-projects\cyclos\build\web\META-INF\context.xml (The system cannot find the path specified)
C:\Programming\nb-projects\cyclos\nbproject\build-impl.xml:868: The module has not been deployed.
BUILD FAILED (total time: 13 seconds)
------------------------------------------------------------------------


First of all - you're welcome. Thanks is enough. I help when I have time,
and don't help when I don't (as do most volunteers on the list).

Hmm. I guess when you create a web application from existing source
(I normally don't do that), you will need to manually create the
context.xml file. NetBeans does this automatically when you've created
a web project from scratch.

I would say not doing this is probably a bug when associating a project
with a Tomcat server (minor, with work-around) and should be filed.
Before you do that, you might make a very small web application by
hand, then create a web application project from existing sources, and try
run. If you've pointed your project at a Tomcat server, I would expect
NetBeans to create a META-INF directory and the appropriate context.xml
file.

At any rate, what you need to do is create the folder and file.

The folder should be under Web Pages in the project view (under
%CYCLOS_HOME%\web in the File view).

Then create a context.xml file with the following information.

Code:
<?xml version="1.0" encoding="UTF-8"?>
<Context antiJARLocking="true" path="/cyclos"/>


See if that's enough to convince NetBeans to copy it to
%CATALINA_HOME%\conf\Catalina\localhost\cyclos.xml and create
the proper docBase.

You really shouldn't have to add the path attribute, and in fact Tomcat 6
considers it an error if applications are in docBase (normally
%CATALINA_HOME%\webapps).

If that doesn't work, then you'll have to add a docBase attribute to the
context.xml file. That should look like the following:

Code:
<?xml version="1.0" encoding="UTF-8"?>
<Context antiJARLocking="true" docBase="absolute-path-to-cyclos-project\build\web" path="/cyclos"/>


Where the absolute-path-to-cyclos-project is exactly what it says. This
basically tells Tomcat that the application lives outside of its docBase
directory. In this case, the path attribute is needed, since Tomcat's
mechanism of figuring it out won't work.

If this does not work, take the above context.xml file and copy it to
%CATALINA_HOME%\conf\localhost\cyclos.xml before you try to run
the project.

Before you deploy the project (either through NetBeans or Tomcat's
manager application), you need to remove both the path and docBase
attributes from context.xml. If you don't, at the very least Tomcat will
probably attempt to deploy the application twice.

Also, if you deploy to the same Tomcat you ran from, make sure there are
no stray cyclos.xml files in %CATALINA_HOME%\conf\Catalina\localhost.
It might also be good to delete everything in %CATALINA_HOME%\work
before doing a deploy (although again, the clean should take care of
this). That's where Tomcat compiles the JSP pages . . .

I've not tried any of this with cyclos, so give it a try and see what
happens.

. . . . just my two cents.

/mde/
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mdeggers



Joined: 28 Jan 2009
Posts: 208

PostPosted: Thu Sep 16, 2010 6:36 pm    Post subject: Re: cyclos, web applications with existing sources Reply with quote

mdeggers wrote:

Hmm. I guess when you create a web application from existing source
(I normally don't do that), you will need to manually create the
context.xml file. NetBeans does this automatically when you've created
a web project from scratch.


I just created a Maven portlet project and watched when
META-INF/context.xml was created. It was created when I went to:

Properties->Run and selected one of my Tomcat servers as the server to
run on.

Try that, and see if NetBeans doesn't create the necessary files.

. . . just my two cents.

/mde/
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Alex-uconomy



Joined: 15 Sep 2010
Posts: 12
Location: Cape Town

PostPosted: Fri Sep 17, 2010 8:29 am    Post subject: progress ? Reply with quote

Heya, thanks again.

I have cleaned tacatlina/localhost and the webApps dir - to make sure nothing interferes.

When starting tomcat within nb, with nothing to deploy or start for the server, i actually got following error ( i did not deploy cyclos, nor anything else apart from standard bits included like webapps/manager- or -/examples )
===============================================
ep 17, 2010 9:17:31 AM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Error configuring application listener of class com.sun.xml.ws.transport.http.servlet.WSServletContextListener
java.lang.ClassNotFoundException: com.sun.xml.ws.transport.http.servlet.WSServletContextListener
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1645)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1491)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4078)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:4630)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:791)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:771)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:546)
at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:637)
at org.apache.catalina.startup.HostConfig.deployDescriptors(HostConfig.java:563)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:498)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1277)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:321)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)
at org.apache.catalina.core.StandardHost.start(StandardHost.java:785)
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1045)
at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:445)
at org.apache.catalina.core.StandardService.start(StandardService.java:519)
at org.apache.catalina.core.StandardServer.start(StandardServer.java:710)
at org.apache.catalina.startup.Catalina.start(Catalina.java:581)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
Sep 17, 2010 9:17:31 AM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Skipped installing application listeners due to previous error(s)
Sep 17, 2010 9:17:38 AM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Error configuring application listener of class com.sun.xml.ws.transport.http.servlet.WSServletContextListener
java.lang.ClassNotFoundException: com.sun.xml.ws.transport.http.servlet.WSServletContextListener
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1645)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1491
================================================

I still tried to carry on as I do not understand this error :(
NB has actually now produced a context.xml file, but i had to set the path to /cyclos, as it was empty - still did not work -
NOW:::
I have included docbase path, now at least the browser starts ant trys to display the page !! i believe that is some progress, as this usually never happened


Could the error now lie within tomcat - "listener" ?

And - shouldn't the configuration files folder in NB, as part of cyclos project, show my srtuts and tiles def files ?? even when they are in a seperate folder ??? - i have done a little struts tutorial, config folder show these files, but files are not in extra folder, they are simply in web-inf dir
While In cyclos, NB does only show me web.xml and context.xml - no other files ! (web.xml does ref the config files though )

This are the only two issues I can think of. Thanks for the docbase tip, since that the browser starts up with the path !
http://localhost:8080/cyclos/
just sass resource not available !!

many thanks mdegger, have a nice day
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mdeggers



Joined: 28 Jan 2009
Posts: 208

PostPosted: Fri Sep 17, 2010 10:43 pm    Post subject: Re: progress ? Reply with quote

Alex-uconomy wrote:
Heya, thanks again.
===============================================
ep 17, 2010 9:17:31 AM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Error configuring application listener of class com.sun.xml.ws.transport.http.servlet.WSServletContextListener
java.lang.ClassNotFoundException: com.sun.xml.ws.transport.http.servlet.WSServletContextListener


It looks like some jar files are not being packaged for some reason.
You might try a clean / build before the run. Cyclos has some folders
underneath WEB-INF/lib that contain some third party jar files.

Since this is a non-standard place to put them, NetBeans might not copy
those files where a servlet container can find them (WEB-INF\lib).

You can check if the jar files (ws-*.jar) made it into the build by doing the
following:

Project->build

Then go to the file view window, and look here:

build->web->WEB-INF->lib

If you don't see them there, then they didn't get copied. I have a feeling
that they might not, since they're in an unusual place.

One way to solve this problem is to make sure that you have the SOAP
web services plugin installed in NetBeans (go to plugins and add them
if you don't have them).

Then check the properties of the project. You'll need to look at the Compile
tab of Project->Libraries.

Make sure METRO 2.0 is there, and the Package checkbox is checked.

Another way you could do this is to use the Add JAR/Folder button and
browse to the web\WEB-INF\lib\metro folder and add all of those jar
files. Again, make sure that the Package checkbox is checked.

About finding the configuration files for Struts, Tiles, Hibernate, and
Spring:

The authors of this software use Eclipse, and the files are placed in
places where NetBeans does not expect them. They're also actually in
places where those respective packages don't expect to find them
either.

NetBeans won't populate the Configuration Files folder with them since
it cannot find them in the usual places.

If you look at web\WEB-INF\web.xml, all of those files are specifically
added to the classpath for various frameworks.

One way to get the Spring configuration files to show up is to go to
Properties->Spring Framework and add each file.

NetBeans doesn't even recognize that this project also uses Hibernate and
Struts. Since I don't have the Struts plug in installed here, I don't know if
there are similar features for that framework.

Personally, I don't think it's worth adding the other frameworks. If you
know where they are (look at web.xml), then NetBeans will do the right
thing when you edit them. The only real issue is that you won't be able to
use the wizard to add new framework-related files unless you manually
add that framework support in Project->Properties->Frameworks-Add.

. . . just my two cents.

/mde/
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Alex-uconomy



Joined: 15 Sep 2010
Posts: 12
Location: Cape Town

PostPosted: Sun Sep 19, 2010 4:47 pm    Post subject: Reply with quote

Hey mdegger

Hope you are having a good weekend, and thaks for yout tips,
I keep learning little bits every day about nb.. ;)

NOw, i have added all lib + struts files through properties.

The app does not deploy
I checkt the cyclos.xml file in catali\ne\localhost - it is emptey

I erased the docbase line in context file, now it deploy but does not start..

Another note - i get errors out of nl.strohal.... files, and thought that this is a bit strange ! as the source files are actially all fine.

Now, i have tried to manually deploy the web fodler in tomcat/webapps - no success - createing thread - failing to unregister jdbc driver.

However, if i take the folder i have started the project with, (saved in diff dir as back up) this will deploy and start in webapps.

It seems as nb corrupts the web folder in a way !? Could it be that nb addes lib files ? or wrong java version !?

I just dont get where the mistake is, of what you have told me so far, the project should be set up fine, especially after adding all files etc..

Not sure if you can help in a way, or you have any other idea.. but I am tired now, and wrote this msg 5 times, cos everytime my session expires.. :x

I will post a new one on monday with error log ! I will set up the project from scratch ones more

Kind regards, enjoy ur weekend
Alex
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Alex-uconomy



Joined: 15 Sep 2010
Posts: 12
Location: Cape Town

PostPosted: Mon Sep 20, 2010 1:23 pm    Post subject: OK OK OK ok ok ok ok ok ok Reply with quote

SOLVED !?!!!?!!!
Now this might be of interest / interesting !!!

The folder i use for setting up the project is the same i can manually deploy in tomcat/webapps

After using this folder in nb, the same folder does not work on tomcat/webapps

NB is adding files to the lib. folder (which are not needed)
And NB is changing the web.xml file !!!!
(adding server-class name and serverlet lines – mapping / ref or something like that / this )

When I changed the web.xml file, I went through it line by line, deleted what was added by NB, I then saved it, and copied it to build/web/web-inf manually, deploy app in NB and it works !!!
If I do a clean and build ! – I ended up with errors again for starting the app !!!!

Works out, before deploying / starting the app in NB I have to delete the “webAppName”.xml file in \apache-tomcat-6.0.29\conf\Catalina\localhost -- every single time

And why does NB copy so many unnecessary files into web-inf/classes !? Can I override / overcome this !?

SO, the listener error of the web app start up was caused because NB changed web.xml file and added a couple of unnecessary lines !!
Changing web.xml back to original/normal and deleting the webAppName.xml file in localhost = PROBLEM SOLVED !!

Thanks for your help mdegger, really appreciated, kept me going ;) If you have any further suggestions for those “minor” issues that are left I’d be very happy to hear them

Kind Regards, and thanks again,
Alex
I hope this post helps others as well !!
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mdeggers



Joined: 28 Jan 2009
Posts: 208

PostPosted: Mon Sep 20, 2010 5:26 pm    Post subject: Re: OK OK OK ok ok ok ok ok ok Reply with quote

Alex-uconomy wrote:
SOLVED !?!!!?!!!
Now this might be of interest / interesting !!!

The folder i use for setting up the project is the same i can manually deploy in tomcat/webapps

After using this folder in nb, the same folder does not work on tomcat/webapps

NB is adding files to the lib. folder (which are not needed)
And NB is changing the web.xml file !!!!
(adding server-class name and serverlet lines – mapping / ref or something like that / this )


Yes, that is indeed the problem. NetBeans is being helpful and analyzing
the source. It adds libraries and servlets that the programmers of
cyclos have done internally. Basically, the cyclos programmers have
reinvented many wheels.

I discovered this when I listed the jars packaged by NetBeans versus
the jars shipped with cyclos.

In order to avoid this, you need to set the following in properties:

Project->Properties->Libraries

At the bottom you will see a check box with the label:

Build Required Projects (Libraries and additional WAR content)

Make sure that the box is UNCHECKED.

This will allow you to build the war file or run from NetBeans (I've
done both) without NetBeans being helpful.

Also note that the cyclos.properties file you edit is in

WEB PAGES->WEB-INF->classes

You cannot edit the one in Source Packages-><default package>

This is the normal place that NetBeans places configuration files to be
copied over to WEB-INF/classes, but any editing changes will not be
seen.

The application itself has many many memory leaks. The registering a
thread issue is being triggered by Tomcat's more rigorous messages
( since 6.0.18 ) concerning threads that are started but not stopped
when the application is undeployed. There are many discussions on the
Tomcat mailing list concerning this.

Some of the other memory leaks are due to the older jar files used in the
application. In particular, both the older Hibernate and ehcache jars
have been known to cause problems.

I ran into this memory issue while undeploying and redeploying cyclos.
Even with the increased memory I added in setenv.sh, I ran out of
permgen space. In general, it looks like you will not be able to easily
deploy and undeploy cyclos without starting and stopping Tomcat.

However, those discussions are better held on the Cyclos forum.

I'm glad you got it running.

Good luck.

. . . . just my two cents.

/mde/
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Alex-uconomy



Joined: 15 Sep 2010
Posts: 12
Location: Cape Town

PostPosted: Thu Sep 23, 2010 7:39 am    Post subject: Reply with quote

Hey mdeggers..

I just been busy now looking at code, and finally getting into the program. totally forgot to thank you once more.

First my employer wanted me to use eclipse... I posted on there forum, same sort of issues setting it up, and i always preferred NB. Glad there are active users here.. ;)

Once I am really into it, I wil ldef try to help other users here.

Thanks again, bb
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mdeggers



Joined: 28 Jan 2009
Posts: 208

PostPosted: Thu Sep 23, 2010 5:55 pm    Post subject: Reply with quote

Alex-uconomy wrote:
Hey mdeggers..

I just been busy now looking at code, and finally getting into the program. totally forgot to thank you once more.

First my employer wanted me to use eclipse... I posted on there forum, same sort of issues setting it up, and i always preferred NB. Glad there are active users here.. Wink

Once I am really into it, I wil ldef try to help other users here.

Thanks again, bb


You're welcome. You might want to edit the cyclos wiki where it gives
instructions about how to import the source into NetBeans. Just add
the part where you uncheck the "Build required projects" check box in
Project->Properties->Libraries.

That way, the next person who does this won't have to ask someone,
search for this thread, or struggle with it for a week. It will be documented
and someone with a question can be pointed right at the wiki page.

Glad you got it all working, and it's great you get to stick with NetBeans
rather than moving to Eclipse.

. . . . just my two cents.

/mde/
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